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Please provide as a hin file containing a structure of all non-hydrogen type atoms.
Then we will provide to you the following matrices and counting polynomials of the structure:
Distance matrix
Maximal fragments matrix
Complement of maximal fragments matrix
Szeged matrix
Cluj fragmental matrix
Note: too many vertices (atoms) and/or too many edges (bonds) it will crash the program.
A example hin file can be found here.